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Curriculum(s) for 2024 - Biochemistry (31179)

Single curriculum

1st year

LessonSemesterCFULanguage
10598561 | Bioorganic Chemistry1st6ENG

Educational objectives

General skills.

At the end of the course and after passing the exam, the student will have acquired the knowledge and skills in the topics listed below. The student will be able to describe the structure of a collection of enzymes, representative of the main reaction mechanisms of bio-organic chemistry and enzymatic classes, using programs for visualization and interactive analysis of biological macromolecules. The student will be able to predict, on the basis of the structure of the active sites of the representative enzymes, their mechanism of action and acceleration of the reaction rate, using the main experimental kinetic investigation methods.

Specific skills.

a) knowledge and understanding:
through the lessons and exercises the student will have to know and understand the relationship between structure and function of the main classes of enzymes involved in the metabolic reactions of the cell; he/she will have to understand the structural basis of rate acceleration; he/she must be able to access and use the databases of the structures of biological macromolecules;

b) applying knowledge and understanding:
the student will be able to use the main theoretical paradigms to interpret the reaction mechanisms of enzymes, and to apply the acquired knowledge for the prediction of the main mechanistic characteristics of new enzymes;

c) making judgments:
the student will be able to describe in full autonomy the mechanism of a chemical reaction catalyzed by an enzyme, highlighting its distinctive characteristics and suggesting experiments to demonstrate the underlying mechanism;

d) communication skills:
the student must have the ability to present and explain the mechanisms of action of enzymes, based on the structure-function relationship determined experimentally, and using scientific and technical language correctly and with rigor;

e) learning skills:
the student will be able to critically examine the course topics, to propose new and independent experimental strategies where possible, to update himself through the consultation of bibliographic and structural databases (eg PubMed and RCSB Protein Data Bank).

Enzyme Catalysis1st3ENG

Educational objectives

General skills.

At the end of the course and after passing the exam, the student will have acquired the knowledge and skills in the topics listed below. The student will be able to describe the structure of a collection of enzymes, representative of the main reaction mechanisms of bio-organic chemistry and enzymatic classes, using programs for visualization and interactive analysis of biological macromolecules. The student will be able to predict, on the basis of the structure of the active sites of the representative enzymes, their mechanism of action and acceleration of the reaction rate, using the main experimental kinetic investigation methods.

Specific skills.

a) knowledge and understanding:
through the lessons and exercises the student will have to know and understand the relationship between structure and function of the main classes of enzymes involved in the metabolic reactions of the cell; he/she will have to understand the structural basis of rate acceleration; he/she must be able to access and use the databases of the structures of biological macromolecules;

b) applying knowledge and understanding:
the student will be able to use the main theoretical paradigms to interpret the reaction mechanisms of enzymes, and to apply the acquired knowledge for the prediction of the main mechanistic characteristics of new enzymes;

c) making judgments:
the student will be able to describe in full autonomy the mechanism of a chemical reaction catalyzed by an enzyme, highlighting its distinctive characteristics and suggesting experiments to demonstrate the underlying mechanism;

d) communication skills:
the student must have the ability to present and explain the mechanisms of action of enzymes, based on the structure-function relationship determined experimentally, and using scientific and technical language correctly and with rigor;

e) learning skills:
the student will be able to critically examine the course topics, to propose new and independent experimental strategies where possible, to update himself through the consultation of bibliographic and structural databases (eg PubMed and RCSB Protein Data Bank).

Bioorganic Reaction Mechanisms1st3ENG

Educational objectives

General skills.

At the end of the course and after passing the exam, the student will have acquired the knowledge and skills in the areas listed below. In general, the student will be able to describe the structure and reactivity of the main functional groups of organic compounds and in particular of those present in biological molecules. On the basis of the knowledge acquired, the student will be able to predict, based on the chemical structure of organic compounds, their reactivity and describe the reaction mechanisms in which the compounds are involved, both in application of the most common organic chemistry methodologies, as well as with a direct correlation to examples of biochemical mechanisms in which the same reactions are catalysed by enzymatic processes. In the future, the student will be able to rely on the knowledge and skills just described for the understanding and interpretation, on an organic chemistry point of view, of the main biochemical processes involved in all areas of biochemistry and other disciplines.

Specific skills.

a) knowledge and understanding:
Knowledge and understanding of the relationship between molecular structure and reactivity of the main functional groups involved in organic reactions and biochemical processes; understanding of reaction mechanisms’ chemical logic;

b) applying knowledge and understanding:
ability to interpret and explain the reaction mechanisms of the most important organic reactions; ability to apply knowledge to enzymatic processes involving these reaction mechanisms;

c) making judgments:
knowing how to interpret the mechanism of an organic reaction; being able to identify such mechanisms in biochemical processes; being able to evaluate the reactivity of organic molecules and of the main biological molecules based on the presence of functional groups;

d) communication skills:
knowing how to illustrate and explain the mechanisms of organic reactions with appropriate terms and with logical rigor; being able to draw the most important molecular structures of organic molecules as well as of biological molecules;

e) learning skills:
acquisition of the fundamentals and cognitive tools to continue independently in the study of bioorganic chemistry and biochemistry; acquisition of basic knowledge to progress independently in other biological chemistry disciplines.

10598562 | Cellular Biochemistry1st12ENG

Educational objectives

General skills.

At the end of the course and passing the exam, the student will have acquired the knowledge and skills in the areas listed below. In general he will be able to: describe structure and function of the main classes of biological macromolecules; explain the main metabolic pathways in terms of regulation and interconnection; identify the mechanisms of adaptations of cellular functions in physiological and pathological conditions. On the basis of the acquired knowledge, the student will have the ability to interpret and explain biological phenomena from the biochemical point of view, describing their molecular basis in terms of structures and biochemical reactions. The students' communication skills will be developed thanks to the possibility of presenting and discussing a scientific paper related to the course program in the classroom. The use of concepts studied in class will be crucial for learning those critical and judgment skills necessary to evaluate the main experimental approaches used in biochemical research.
In the future, the student will be able to count on the knowledge and skills just described for the understanding of other disciplines and for working in clinical and research laboratories.

Specific skills

a) knowledge and understanding:
- Knowledge of cell structure and physiology. Membrane composition and intracellular trafficking. Mechanisms of signal transduction. Biochemical mechanisms of DNA replication and transcription. Ribosomal and non-ribosomal translation. Role of post-translational modifications. Protein sorting. Integrated cell metabolism and its regulation
-Knowledge and understanding of the relationship between structure and function of the macromolecules involved in the main cellular processes;
-understanding of the mechanisms that regulate the metabolism;
-knowledge of the main metabolic pathways in the physio-pathological processes;

b) ability to apply knowledge and understanding:
-ability to interpret and explain biological phenomena from a biochemical point of view;
-ability to gain insight into the interconnections of cellular functions in response to exogenous and endogenous stimuli;

c) autonomy of judgment:
-being able to identify biological and biomedical phenomena that can be explained through biochemical processes;
-being able to identify and evaluate cellular and metabolic adaptations in response to physiological and pathological signals;

d) communication skills:
-knowing how to illustrate and explain biochemical phenomena with appropriate terms and with logical reasoning;
-knowing how to describe and connect the main biosignaling mechanisms;
-being able to describe the biochemical mechanisms of the main cellular processes;

e) learning ability:
-acquisition of the fundamentals and cognitive skills to autonomously continue deepening cell biochemistry;
-acquisition of basic knowledge to progress independently in other biological disciplines;
-acquisition of the ability to quickly learn and apply biochemical and cellular knowledge in working contexts of planning research activities;

Cell Molecular Biology1st3ENG

Educational objectives

General skills.

At the end of the course and passing the exam, the student will have acquired the knowledge and skills in the areas listed below. In general he will be able to: describe structure and function of the main classes of biological macromolecules; explain the main metabolic pathways in terms of regulation and interconnection; identify the mechanisms of adaptations of cellular functions in physiological and pathological conditions. On the basis of the acquired knowledge, the student will have the ability to interpret and explain biological phenomena from the biochemical point of view, describing their molecular basis in terms of structures and biochemical reactions. The students' communication skills will be developed thanks to the possibility of presenting and discussing a scientific paper related to the course program in the classroom. The use of concepts studied in class will be crucial for learning those critical and judgment skills necessary to evaluate the main experimental approaches used in biochemical research.
In the future, the student will be able to count on the knowledge and skills just described for the understanding of other disciplines and for working in clinical and research laboratories.

Specific skills.

a) knowledge and understanding:
-Knowledge and understanding of the relationship between structure and function of the informational macromolecules involved in the main cellular processes;
- knowledge of Biochemical mechanisms of cell homeostasis. DNA repair and recombination. Cell cycle. Cancer. Apoptosis.
-understanding of the mechanisms that regulate the biogenesis and homeostasis of macromolecules;
-knowledge of the main metabolic pathways controlling informational macromolecules in the physio-pathological processes;

b) ability to apply knowledge and understanding:
-ability to interpret and explain biological phenomena by macromolecules control in response to exogenous and endogenous stimuli;

c) autonomy of judgment:
-being able to identify the molecular mechanism controlling the main biological and biomedical phenomena;
-being able to identify and evaluate macromolecular adaptations in response to physiological and pathological signals;

d) communication skills:
-knowing how to illustrate and explain phenomena on involving informational macromolecules with appropriate terms and with logical reasoning;
-knowing how to describe and connect the main biosignaling mechanisms;
-being able to describe the molecular mechanisms of the main cellular processes at the molecular level;

e) learning ability:
-acquisition of the fundamentals and cognitive skills to autonomously continue deepening cellular processes;
-acquisition of basic knowledge to progress independently in other biological disciplines;
-acquisition of the ability to quickly learn and apply molecular and cellular knowledge in working contexts of planning research activities;

Cell Structure and Metabolism1st9ENG

Educational objectives

General skills.

At the end of the course and passing the exam, the student will have acquired the knowledge and skills in the areas listed below. In general he will be able to: describe structure and function of the main classes of biological macromolecules; explain the main metabolic pathways in terms of regulation and interconnection; identify the mechanisms of adaptations of cellular functions in physiological and pathological conditions. On the basis of the acquired knowledge, the student will have the ability to interpret and explain biological phenomena from the biochemical point of view, describing their molecular basis in terms of structures and biochemical reactions. The students' communication skills will be developed thanks to the possibility of presenting and discussing a scientific paper related to the course program in the classroom. The use of concepts studied in class will be crucial for learning those critical and judgment skills necessary to evaluate the main experimental approaches used in biochemical research.
In the future, the student will be able to count on the knowledge and skills just described for the understanding of other disciplines and for working in clinical and research laboratories.

Specific skills

a) knowledge and understanding:
- Knowledge of cell structure and physiology. Membrane composition and intracellular trafficking. Mechanisms of signal transduction. Biochemical mechanisms of DNA replication and transcription. Ribosomal and non-ribosomal translation. Role of post-translational modifications. Protein sorting. Integrated cell metabolism and its regulation
-Knowledge and understanding of the relationship between structure and function of the macromolecules involved in the main cellular processes;
-understanding of the mechanisms that regulate the metabolism;
-knowledge of the main metabolic pathways in the physio-pathological processes;

b) ability to apply knowledge and understanding:
-ability to interpret and explain biological phenomena from a biochemical point of view;
-ability to gain insight into the interconnections of cellular functions in response to exogenous and endogenous stimuli;

c) autonomy of judgment:
-being able to identify biological and biomedical phenomena that can be explained through biochemical processes;
-being able to identify and evaluate cellular and metabolic adaptations in response to physiological and pathological signals;

d) communication skills:
-knowing how to illustrate and explain biochemical phenomena with appropriate terms and with logical reasoning;
-knowing how to describe and connect the main biosignaling mechanisms;
-being able to describe the biochemical mechanisms of the main cellular processes;

e) learning ability:
-acquisition of the fundamentals and cognitive skills to autonomously continue deepening cell biochemistry;
-acquisition of basic knowledge to progress independently in other biological disciplines;
-acquisition of the ability to quickly learn and apply biochemical and cellular knowledge in working contexts of planning research activities;

10598564 | Structure and Function of Macromolecules 1st9ENG

Educational objectives

General Skills

At the end of the course the students will know the main biochemical and biophysical principles applied to investigation techniques for the study of folding, structure/function and interactions of biological macromolecules. Given a specific biological problem, they will be able to identify which of the techniques covered during the course is more suitable to provide the expected information. Finally, students will be able to understand the meaning of the experimental data obtained with the different techniques within a scientific context.

The course is divided into three sections: Folding; Structure; Interactions.
The three sections aim at achieving the following common specific skills.

Specific Skills

a) knowledge and understanding:
Knowledge and understanding of the structure-function relationships in biological macromolecules;
Knowledge and understanding of the physical principle underlying the various techniques;
Knowledge of the main components of the instruments used to perform the different techniques;
Knowledge of the main fields of application of the techniques studied and their complementarity;
Understanding of the data analysis principles of the studied methodologies;

b) ability to apply knowledge and understanding:
Ability to perform, under the supervision of an expert, some of the techniques object of the laboratory classes;
Ability to interpret and understand the data obtained through the techniques covered by the course;

c) autonomy of judgment:
Being able to autonomously understand the results of a study (article, presentation) that is based on the techniques studied in the course. This skill will be reinforced by the analysis, through flipped classrooms, of recently published scientific works;
Ability to select, with respect to a specific biological problem, the most appropriate experimental techniques to tackle the problem;
Ability to solve autonomously the principal experimental problems that may arise using the methodologies described in the course;
Ability to design an experiment based on one of the techniques object of the laboratory classes;

d) communication skills:
Be able to describe the meaning and the working principles of the techniques analysed in the course;
Knowing how to illustrate the data and results obtained using the studied techniques. This skill will be achieved through flipped classroom and laboratory activities;

e) learning ability:
Acquisition of the fundamentals and cognitive tools to continue autonomously in the study of one or more of the techniques illustrated in the course;
Acquisition of the cognitive tools necessary to be trained in the autonomous use of one or more of the techniques studied in the course, in the field of public or private research;
Ability to quickly learn new experimental techniques;
Ability to dynamically adapt to the evolution of methodologies and scientific instruments characterising the biotechnology R&D laboratories.

Macromolecules1st6ENG

Educational objectives

General Skills

At the end of the course the students will know the main biochemical and biophysical principles applied to investigation techniques for the study of folding, structure/function and interactions of biological macromolecules. Given a specific biological problem, they will be able to identify which of the techniques covered during the course is more suitable to provide the expected information. Finally, students will be able to understand the meaning of the experimental data obtained with the different techniques within a scientific context.

The course is divided into three sections: Folding; Structure; Interactions.
The three sections aim at achieving the following common specific skills.

Specific Skills

a) knowledge and understanding:
Knowledge and understanding of the structure-function relationships in biological macromolecules;
Knowledge and understanding of the physical principle underlying the various techniques;
Knowledge of the main components of the instruments used to perform the different techniques;
Knowledge of the main fields of application of the techniques studied and their complementarity;
Understanding of the data analysis principles of the studied methodologies;

b) ability to apply knowledge and understanding:
Ability to perform, under the supervision of an expert, some of the techniques object of the laboratory classes;
Ability to interpret and understand the data obtained through the techniques covered by the course;

c) autonomy of judgment:
Being able to autonomously understand the results of a study (article, presentation) that is based on the techniques studied in the course. This skill will be reinforced by the analysis, through flipped classrooms, of recently published scientific works;
Ability to select, with respect to a specific biological problem, the most appropriate experimental techniques to tackle the problem;
Ability to solve autonomously the principal experimental problems that may arise using the methodologies described in the course;
Ability to design an experiment based on one of the techniques object of the laboratory classes;

d) communication skills:
Be able to describe the meaning and the working principles of the techniques analysed in the course;
Knowing how to illustrate the data and results obtained using the studied techniques. This skill will be achieved through flipped classroom and laboratory activities;

e) learning ability:
Acquisition of the fundamentals and cognitive tools to continue autonomously in the study of one or more of the techniques illustrated in the course;
Acquisition of the cognitive tools necessary to be trained in the autonomous use of one or more of the techniques studied in the course, in the field of public or private research;
Ability to quickly learn new experimental techniques;
Ability to dynamically adapt to the evolution of methodologies and scientific instruments characterising the biotechnology R&D laboratories.

Biophysical Methods1st3ENG

Educational objectives

General Skills

At the end of the course the students will know the main biochemical and biophysical principles applied to investigation techniques for the study of folding, structure/function and interactions of biological macromolecules. Given a specific biological problem, they will be able to identify which of the techniques covered during the course is more suitable to provide the expected information. Finally, students will be able to understand the meaning of the experimental data obtained with the different techniques within a scientific context.

The course is divided into three sections: Folding; Structure; Interactions.
The three sections aim at achieving the following common specific skills.

Specific Skills

a) knowledge and understanding:
Knowledge and understanding of the structure-function relationships in biological macromolecules;
Knowledge and understanding of the physical principle underlying the various techniques;
Knowledge of the main components of the instruments used to perform the different techniques;
Knowledge of the main fields of application of the techniques studied and their complementarity;
Understanding of the data analysis principles of the studied methodologies;

b) ability to apply knowledge and understanding:
Ability to perform, under the supervision of an expert, some of the techniques object of the laboratory classes;
Ability to interpret and understand the data obtained through the techniques covered by the course;

c) autonomy of judgment:
Being able to autonomously understand the results of a study (article, presentation) that is based on the techniques studied in the course. This skill will be reinforced by the analysis, through flipped classrooms, of recently published scientific works;
Ability to select, with respect to a specific biological problem, the most appropriate experimental techniques to tackle the problem;
Ability to solve autonomously the principal experimental problems that may arise using the methodologies described in the course;
Ability to design an experiment based on one of the techniques object of the laboratory classes;

d) communication skills:
Be able to describe the meaning and the working principles of the techniques analysed in the course;
Knowing how to illustrate the data and results obtained using the studied techniques. This skill will be achieved through flipped classroom and laboratory activities;

e) learning ability:
Acquisition of the fundamentals and cognitive tools to continue autonomously in the study of one or more of the techniques illustrated in the course;
Acquisition of the cognitive tools necessary to be trained in the autonomous use of one or more of the techniques studied in the course, in the field of public or private research;
Ability to quickly learn new experimental techniques;
Ability to dynamically adapt to the evolution of methodologies and scientific instruments characterising the biotechnology R&D laboratories.

10598565 | Microorganism and Plant Biochemistry1st6ENG

Educational objectives

The course of "Microorganism and Plant Biochemistry" is divided into two integrated modules: "Microorganism Biochemistry and Physiology" and "Plant Biochemistry and Physiology". The aim of the course is to integrate and deepen the general knowledge and skills of biochemistry and metabolism, previously acquired by the students, with specific skills in the field of biochemistry and physiology of plants and microorganisms, which are at the base of modern biotechnologies used in industrial, environmental, medical, and pharmaceutical fields.

Plant Biochemistry and Physiology1st3ENG

Educational objectives

General skills

The module aims at providing the basis for understanding the biochemical mechanisms and mechanistic “logic” of some important specific plant processes. It introduces the students to the complexity and potentiality of the plant metabolism and the role of plant specialized metabolites in the interaction with the environment. Some of these metabolites become molecules used as drugs for pharmaceutical employment. The module also aims at providing a view on how recent methodological advances in biochemistry and structural biology are boosting the knowledge of the mechanisms underlying the perception and response to biotic stress and the function of the plant immune system, as compared to the immune system of animals.
In addition to the lectures, training activities include thematic seminars organized for in-depth analysis and discussions by the students in the classroom focusing on both reviews and recent high-quality experimental publications. This will expose students, on the one hand, to a broad vision of relevant issues and topics covered by the module and, on the other hand, to exemplary experimental paths that provide the knowledge of methods and tools suitable for modern investigations.

Specific skills

a) knowledge and understanding
Upon successful completion, students will:
1. Understand the function of the main biochemical processes and metabolism of plants, the plant immunity and the biochemical relationships between the different types of plant cells and tissues;
2. Have the ability to compare and critically evaluate recent advances in plant biochemistry;
3. Understand the biochemical evolution and the adaptive strategies of plant metabolism;
4. Understand the biochemical logic of the specific perception and transduction events occurring during plant-pathogen interactions;
5. Understand the role of molecules and proteins contrasting plant diseases and their possible exploitation for crop improvement;
6. Understand how the biochemical processes can be manipulated;
7. Start a research by critically reading the literature and learnig how new findings influence progress in the knowledge of plant biology.

b) applying knowledge and understanding
- ability to recognize the nature of the most important metabolites of plant origin;
- ability to illustrate the metabolic pathways of plants;
- ability to illustrate the basic mechanisms of plant immunity;
- ability of a correct interpretation of a scientific work.

c) making judgments
- acquire skills for autonomous and critical evaluation of the issues related to biochemistry and plant immunity and, more in general, related to biochemical research;
- ability to identify the most suitable methodological approaches for basic and/or applied research in the field of biochemistry and plant immunity;
- be able to self-assess skills.

d) communication skills
The student must be able to:
- illustrate, with appropriate terms, adequate rigor and scientific language, its general knowledge and recent results on the biochemical and structural aspects of plant metabolism and immunity;
- process in the best way the information to be disseminated;
- efficiently communicate in oral form, also through the use of information technology and multimedia communication tools.

e) learning skills
- deepen the critical knowledge in the specific and general field of plant biochemistry
- be able to lead and sustain a critical discussion presenting complex ideas in a concise and clear way.

Microorganism Biochemistry and Physiology1st3ENG

Educational objectives

General skills

At the end of the course and upon passing the exam, the student will have acquired the knowledge and skills on the biochemical and physiological processes specific to prokaryotic cells and will be able to explain in biochemical terms the diversity and lifestyle of the different Bacteria based on structural and nutritional properties and respiratory and fermentative metabolic abilities. The student will acquire specific knowledge related to the biochemical characteristics of microorganisms in the physiological response to stress, in the ability to adapt and communicate between cells. The analytical and learning skills of the students will be exercised through the assignment of original scientific works to be elaborated as oral presentations, useful for the deepening of the experimental methods of genetics and biochemistry used for the study of microbial physiology. The discussion of the presentations of the students in the classroom will allow to deepen the concepts studied in class, improving the communication skills of the students through discussion and interpretation of original experimental data.

Specific skills

a) knowledge and understanding:
knowledge of the biosynthetic pathways that lead to the biogenesis of the peculiar components of the prokaryotic cell and the transport and secretion systems; knowledge of the factors of diversity and metabolic versatility that characterize prokaryotes and that affect respiratory and fermentative microbial growth and metabolism;

b) applying knowledge and understanding:
ability to recognize and classify microorganisms based on knowledge of their metabolic and respiratory abilities and adaptive strategies;
know how to describe the main metabolic pathways proper to prokaryotic cells;

c) making judgments:
know how to analyze recent literature related to the aspects of biochemistry and microbial physiology and critically reading of the results;
know how to apply the knowledge of physiology and biochemistry of bacteria to industrial and biotechnological research projects;

d) communication skills:
know how to illustrate and explain with appropriate terms and with scientific rigor research reports and scientific publications including aspects of biochemistry and microbial physiology;

e) learning skills:
acquisition of the fundamentals and cognitive tools to continue independently in the deepening of Microbiology;
acquisition of basic knowledge to progress independently in other biological disciplines

10598566 | Physiopathology and Pharmacology 2nd9ENG

Educational objectives

This course provides an introduction to the pathologic basis of disease and drug treatment, and draws together knowledge gained from prerequisite subjects into the study of the aetiology and pathogenesis of disease. It focuses on the interaction between the immune and the nervous systems at molecular, cellular and systems levels, and provides an overview of current and developing concepts in Neuroimmunology from both Neuroscience and Immunology perspectives. It aims to familiarize students with the molecular and cellular elements of interconnectivity between the immune and nervous systems and the effect of neuro-immune interaction on physiological responses and disease processes. Moreover, it provides the basis of crosstalk between cells of immune and nervous systems in the stress response and in the onset and development of neurological disorders. Students will be introduced to concepts of cellular injury, inflammation and necrosis. The fundamentals of pharmacology including targets of drug action, absorption and metabolism of drugs and drug development will also be detailed. This provides a platform for commencing the integrated study of pathophysiology, pathology and drug treatment of various disorders, beginning with pain, inflammation and neoplasia.

Specific skills.

a) knowledge and understanding
- Knowledge and understanding of the relationship between structure and function of the main cell types of the nervous system;
- understanding of neuronal and glial development;
- knowledge of the main signaling pathways of neurotransmission and drug targets;
- understanding of the principles and phenomena underlying the main neuropharmacological tools;

b) applying knowledge and understanding
- ability to interpret and explain the neuronal functions from a physiological and pharmacological point of view;
- ability to apply appropriate techniques to specific experimental problems;

c) making judgments
- be able to understand physiological relationships between cells;
- be able to identify physiological phenomena that can be explained using a pharmacological approach;
- be able to select and evaluate the most appropriate techniques to solve a specific experimental problem;

d) communication skills
- be able to illustrate and explain physiological phenomena with appropriate terms and with logical rigor;
- be able to explain pharmacological drug action in general;
- be able to describe how the main physiological and pharmacological techniques work;

e) learning skills
- acquisition of the fundamentals and cognitive tools to continue independently in the study of physiology and pharmacology;
- acquisition of the basic knowledge necessary to progress autonomously in other biological disciplines;
- ability to learn quickly and apply physiological and pharmacological techniques in laboratory working environments;

Pharmacology2nd3ENG

Educational objectives

This course provides an introduction to the pathologic basis of disease and drug treatment, and draws together knowledge gained from prerequisite subjects into the study of the aetiology and pathogenesis of disease. It focuses on the interaction between the immune and the nervous systems at molecular, cellular and systems levels, and provides an overview of current and developing concepts in Neuroimmunology from both Neuroscience and Immunology perspectives. It aims to familiarize students with the molecular and cellular elements of interconnectivity between the immune and nervous systems and the effect of neuro-immune interaction on physiological responses and disease processes. Moreover, it provides the basis of crosstalk between cells of immune and nervous systems in the stress response and in the onset and development of neurological disorders. Students will be introduced to concepts of cellular injury, inflammation and necrosis. The fundamentals of pharmacology including targets of drug action, absorption and metabolism of drugs and drug development will also be detailed. This provides a platform for commencing the integrated study of pathophysiology, pathology and drug treatment of various disorders, beginning with pain, inflammation and neoplasia.

Specific skills.

a) knowledge and understanding
- Knowledge and understanding of the relationship between structure and function of the main cell types of the nervous system;
- understanding of neuronal and glial development;
- knowledge of the main signaling pathways of neurotransmission and drug targets;
- understanding of the principles and phenomena underlying the main neuropharmacological tools;

b) applying knowledge and understanding
- ability to interpret and explain the neuronal functions from a physiological and pharmacological point of view;
- ability to apply appropriate techniques to specific experimental problems;

c) making judgments
- be able to understand physiological relationships between cells;
- be able to identify physiological phenomena that can be explained using a pharmacological approach;
- be able to select and evaluate the most appropriate techniques to solve a specific experimental problem;

d) communication skills
- be able to illustrate and explain physiological phenomena with appropriate terms and with logical rigor;
- be able to explain pharmacological drug action in general;
- be able to describe how the main physiological and pharmacological techniques work;

e) learning skills
- acquisition of the fundamentals and cognitive tools to continue independently in the study of physiology and pharmacology;
- acquisition of the basic knowledge necessary to progress autonomously in other biological disciplines;
- ability to learn quickly and apply physiological and pharmacological techniques in laboratory working environments;

Physiology and Pathology2nd6ENG

Educational objectives

This course provides an introduction to the pathologic basis of disease and drug treatment, and draws together knowledge gained from prerequisite subjects into the study of the aetiology and pathogenesis of disease. It focuses on the interaction between the immune and the nervous systems at molecular, cellular and systems levels, and provides an overview of current and developing concepts in Neuroimmunology from both Neuroscience and Immunology perspectives. It aims to familiarize students with the molecular and cellular elements of interconnectivity between the immune and nervous systems and the effect of neuro-immune interaction on physiological responses and disease processes. Moreover, it provides the basis of crosstalk between cells of immune and nervous systems in the stress response and in the onset and development of neurological disorders. Students will be introduced to concepts of cellular injury, inflammation and necrosis. The fundamentals of pharmacology including targets of drug action, absorption and metabolism of drugs and drug development will also be detailed. This provides a platform for commencing the integrated study of pathophysiology, pathology and drug treatment of various disorders, beginning with pain, inflammation and neoplasia.

Specific skills.

a) knowledge and understanding
- Knowledge and understanding of the relationship between structure and function of the main cell types of the nervous system;
- understanding of neuronal and glial development;
- knowledge of the main signaling pathways of neurotransmission and drug targets;
- understanding of the principles and phenomena underlying the main neuropharmacological tools;

b) applying knowledge and understanding
- ability to interpret and explain the neuronal functions from a physiological and pharmacological point of view;
- ability to apply appropriate techniques to specific experimental problems;

c) making judgments
- be able to understand physiological relationships between cells;
- be able to identify physiological phenomena that can be explained using a pharmacological approach;
- be able to select and evaluate the most appropriate techniques to solve a specific experimental problem;

d) communication skills
- be able to illustrate and explain physiological phenomena with appropriate terms and with logical rigor;
- be able to explain pharmacological drug action in general;
- be able to describe how the main physiological and pharmacological techniques work;

e) learning skills
- acquisition of the fundamentals and cognitive tools to continue independently in the study of physiology and pharmacology;
- acquisition of the basic knowledge necessary to progress autonomously in other biological disciplines;
- ability to learn quickly and apply physiological and pharmacological techniques in laboratory working environments;

10598567 | Bioinformatics and Data Handling2nd9ENG

Educational objectives

General Skills

The aim of the course is to teach students the basic knowledge of data handling and statistical data analysis. The first step of the course will be to know the procedure for collecting and organizing data, using data analysis software. In addition, basic statistical tests and some of the best known techniques of analysis, visualization and classification of data will be taught. Students will be able to design analyses, organize data appropriately and interpret results. The course also aims to provide basic programming knowledge for statistical data analysis and to learn how to efficiently present the final results. Course materials and scientific articles will be made available for further information.

Specific skills

a) knowledge and understanding:
• Understanding both the basic statistics and the management of biological data;
• Basic knowledge of programming languages and software used for data analysis;

b) ability to apply knowledge and understanding:
• Ability to use software and programming languages in order to analyze biological data, perform statistical tests, organize and query several different types of data;
• Ability to apply learned techniques to specific biological problems;
• Ability to investigate the properties of biological data as response to a scientific question;

c) autonomy of judgment:
• Knowing how to organize different types of biological data;
• Knowing how to perform statistical analysis on biological data;
• Knowing how to independently design and write scripts for data analysis;
• Knowing how to select and interpret the main statistical tests and the main data analysis techniques;

d) communication skills:
• Ability to discuss which techniques are required for a specific data analysis;
• Knowing how to properly present the results obtained with the right choice of the type of graphic representation;
• Knowing how to describe the logic of programming design;

e) learning ability:
• Knowing how to formulate the question of interest and design the corresponding analysis;
• Acquire the key concepts and principal tools to be independently adopted also to new problems, which are not directly connected with the cases discussed during the lessons;
• Ability to learn new concepts of data analysis and statistics, starting from the basic knowledge acquired during the course.

Bioinformatics2nd6ENG

Educational objectives

General skills

This course is aimed at providing the students with an overview of the most common Bioinformatics techniques and to describe their theoretical basis. About half of the course will be spent learning the practical use of programs implementing these techniques. At the end, students will be able to rationally and effectively use the most widespread programs for sequence and structure analysis and to understand correctly their results. The course consists of lectures that cover the main topics of the program and practical exercises. Exercises are carried out in a computer room with the use of open-source software for the visualization of the tridimensional structure of macromolecules. Beside textbooks, students have access to lectures' slides, scientific articles, and other teaching resources made available throughout web sites.

Specific skills

a) knowledge and understanding:
• Understanding the theory of Bioinformatics algorithms;
• Knowledge of the tools necessary for a detailed and critical analysis of the sequences and structures of proteins and their macromolecular complexes using Bioinformatics;

b) ability to apply knowledge and understanding:
• Ability to use open-source software for the analysis of sequences and structures of biological macromolecules;
• Ability to apply the techniques learned to specific problems;

c) autonomy of judgment:
• Knowing how to independently solve Bioinformatics problems;
• Knowing how to independently conduct analyses on biological data;
• Knowing how to consult the main biological databases;
• Knowing how to select and evaluate the most appropriate Bioinformatics techniques to solve a given problem;

d) communication skills:
• Acquire the ability to discuss and transfer the gained skills to support their arguments;
• Knowing how to present the data obtained from the analyses with appropriate terms and with logical rigor;
• Knowing how to describe the functioning of the main Bioinformatics software;

e) learning ability:
• Be able to align the skills learned with the progress of research in Biology and Bioinformatics;
• Acquire the fundamentals and cognitive tools to autonomously continue in the deepening of Bioinformatics;
• Ability to quickly learn and apply Bioinformatics techniques in laboratory work contexts;

Data Handling2nd3ENG

Educational objectives

General Skills

The aim of the course is to teach students the basic knowledge of data handling and statistical data analysis. The first step of the course will be to know the procedure for collecting and organizing data, using data analysis software. In addition, basic statistical tests and some of the best known techniques of analysis, visualization and classification of data will be taught. Students will be able to design analyses, organize data appropriately and interpret results. The course also aims to provide basic programming knowledge for statistical data analysis and to learn how to efficiently present the final results. Course materials and scientific articles will be made available for further information.

Specific skills

a) knowledge and understanding:
• Understanding both the basic statistics and the management of biological data;
• Basic knowledge of programming languages and software used for data analysis;

b) ability to apply knowledge and understanding:
• Ability to use software and programming languages in order to analyze biological data, perform statistical tests, organize and query several different types of data;
• Ability to apply learned techniques to specific biological problems;
• Ability to investigate the properties of biological data as response to a scientific question;

c) autonomy of judgment:
• Knowing how to organize different types of biological data;
• Knowing how to perform statistical analysis on biological data;
• Knowing how to independently design and write scripts for data analysis;
• Knowing how to select and interpret the main statistical tests and the main data analysis techniques;

d) communication skills:
• Ability to discuss which techniques are required for a specific data analysis;
• Knowing how to properly present the results obtained with the right choice of the type of graphic representation;
• Knowing how to describe the logic of programming design;

e) learning ability:
• Knowing how to formulate the question of interest and design the corresponding analysis;
• Acquire the key concepts and principal tools to be independently adopted also to new problems, which are not directly connected with the cases discussed during the lessons;
• Ability to learn new concepts of data analysis and statistics, starting from the basic knowledge acquired during the course.

10598568 | Biochemical Methodologies2nd9ENG

Educational objectives

General skills.

At the end of the course and after passing the exam, the student will have acquired the knowledge and skills in the areas below. In general, it will be able to: explain the principles and the applications of the most common biochemical methodologies and set up an experiment starting from the consultation of the literature up to its execution on the laboratory counter. On the basis of the acquired knowledge, the student will have the ability to interpret and explain the results of the biochemical experiments through the interpretation and discussion of the experimental results. Students' critical and judgmental skills will be developed through numerous classroom exercises in which numerical exercises and database research will be carried out, and several practical laboratory experiences (starting from cloning of PCR-produced DNA fragments to purification and characterization of proteins with enzymatic activity). Communication skills will be exercised during the theoretical and practical lessons, which will include moments of open discussion. In the future, the student will be able to count on the knowledge and skills herein acquired for work in analysis and research laboratories.

Specific skills.

a) Knowledge and understanding of the following:
- methodologies concerning recombinant DNA (PCR, restriction, ligation);
- methodologies for the purification of DNA and RNA from cell cultures and tissues;
- methodologies for the analysis of nucleic acids: mRNA reverse transcriptase PCR (RT-PCR), quantitative PCR (Real-time qPCR);
- basic techniques of cell culture;
- preparative methods for the purification of proteins (centrifugation, chromatography);
- analytical methodologies for the study of DNA and proteins (electrophoresis);
- spectrophotometric techniques applied to the study of proteins and to enzyme kinetics;

b) Ability to apply knowledge and understanding:
- ability to apply the appropriate techniques to specific experimental problems, starting from scientific literature and database research;
- ability to design and carry out biochemical experiments concerning structure and function of DNA, proteins and enzymes;
- ability to interpret and discuss experimental results and to explain biological phenomena with biochemical argumentations;

c) Autonomy of judgment:
- to be able to solve autonomously both experimental and numerical problems;
- to know how to select and evaluate the most appropriate techniques to solve a specific experimental problem;

d) Communication skills:
- to be able to illustrate and explain biochemical phenomena with appropriate terms and logical rigor;
- to be able to describe the principles behind the main biochemical techniques;
- to know how to discuss and describe the experimental results in a critical key;

e) Learning ability:
- acquisition of the fundamentals cognitive tools to be able to independently continue the study of biochemistry, both from a theoretical and a practical point of view;
- acquisition of basic knowledge to progress autonomously in other related biological disciplines.

Protein Purification and Characterization2nd6ENG

Educational objectives

General skills.

At the end of the course and after passing the exam, the student will have acquired the knowledge and skills in the areas below. In general, it will be able to: explain the principles and the applications of the most common biochemical methodologies and set up an experiment starting from the consultation of the literature up to its execution on the laboratory counter. On the basis of the acquired knowledge, the student will have the ability to interpret and explain the results of the biochemical experiments through the interpretation and discussion of the experimental results. Students' critical and judgmental skills will be developed through numerous classroom exercises in which numerical exercises and database research will be carried out, and several practical laboratory experiences (starting from cloning of PCR-produced DNA fragments to purification and characterization of proteins with enzymatic activity). Communication skills will be exercised during the theoretical and practical lessons, which will include moments of open discussion. In the future, the student will be able to count on the knowledge and skills herein acquired for work in analysis and research laboratories.

Specific skills.

a) Knowledge and understanding of the following:
- methodologies concerning recombinant DNA (PCR, restriction, ligation);
- methodologies for the purification of DNA and RNA from cell cultures and tissues;
- methodologies for the analysis of nucleic acids: mRNA reverse transcriptase PCR (RT-PCR), quantitative PCR (Real-time qPCR);
- basic techniques of cell culture;
- preparative methods for the purification of proteins (centrifugation, chromatography);
- analytical methodologies for the study of DNA and proteins (electrophoresis);
- spectrophotometric techniques applied to the study of proteins and to enzyme kinetics;

b) Ability to apply knowledge and understanding:
- ability to apply the appropriate techniques to specific experimental problems, starting from scientific literature and database research;
- ability to design and carry out biochemical experiments concerning structure and function of DNA, proteins and enzymes;
- ability to interpret and discuss experimental results and to explain biological phenomena with biochemical argumentations;

c) Autonomy of judgment:
- to be able to solve autonomously both experimental and numerical problems;
- to know how to select and evaluate the most appropriate techniques to solve a specific experimental problem;

d) Communication skills:
- to be able to illustrate and explain biochemical phenomena with appropriate terms and logical rigor;
- to be able to describe the principles behind the main biochemical techniques;
- to know how to discuss and describe the experimental results in a critical key;

e) Learning ability:
- acquisition of the fundamentals cognitive tools to be able to independently continue the study of biochemistry, both from a theoretical and a practical point of view;
- acquisition of basic knowledge to progress autonomously in other related biological disciplines.

Molecular Biology Techniques2nd3ENG

Educational objectives

General skills.

At the end of the course and after passing the exam, the student will have acquired the knowledge and skills in the areas below. In general, it will be able to: explain the principles and the applications of the most common biochemical methodologies and set up an experiment starting from the consultation of the literature up to its execution on the laboratory counter. On the basis of the acquired knowledge, the student will have the ability to interpret and explain the results of the biochemical experiments through the interpretation and discussion of the experimental results. Students' critical and judgmental skills will be developed through numerous classroom exercises in which numerical exercises and database research will be carried out, and several practical laboratory experiences (starting from cloning of PCR-produced DNA fragments to purification and characterization of proteins with enzymatic activity). Communication skills will be exercised during the theoretical and practical lessons, which will include moments of open discussion. In the future, the student will be able to count on the knowledge and skills herein acquired for work in analysis and research laboratories.

Specific skills.

a) Knowledge and understanding of the following:
- methodologies concerning recombinant DNA (PCR, restriction, ligation);
- methodologies for the purification of DNA and RNA from cell cultures and tissues;
- methodologies for the analysis of nucleic acids: mRNA reverse transcriptase PCR (RT-PCR), quantitative PCR (Real-time qPCR);
- basic techniques of cell culture;
- preparative methods for the purification of proteins (centrifugation, chromatography);
- analytical methodologies for the study of DNA and proteins (electrophoresis);
- spectrophotometric techniques applied to the study of proteins and to enzyme kinetics;

b) Ability to apply knowledge and understanding:
- ability to apply the appropriate techniques to specific experimental problems, starting from scientific literature and database research;
- ability to design and carry out biochemical experiments concerning structure and function of DNA, proteins and enzymes;
- ability to interpret and discuss experimental results and to explain biological phenomena with biochemical argumentations;

c) Autonomy of judgment:
- to be able to solve autonomously both experimental and numerical problems;
- to know how to select and evaluate the most appropriate techniques to solve a specific experimental problem;

d) Communication skills:
- to be able to illustrate and explain biochemical phenomena with appropriate terms and logical rigor;
- to be able to describe the principles behind the main biochemical techniques;
- to know how to discuss and describe the experimental results in a critical key;

e) Learning ability:
- acquisition of the fundamentals cognitive tools to be able to independently continue the study of biochemistry, both from a theoretical and a practical point of view;
- acquisition of basic knowledge to progress autonomously in other related biological disciplines.

10598569 | Biochemical Biotechnologies I2nd6ENG

Educational objectives

General skills

The course aims to provide students with the biochemical bases to: understand the most advanced biotechnological applications of enzymes, proteins and complex multienzymatic systems; understand the methods and strategies required for protein engineering. Students' critical and judgment skills will be developed thanks to class exercises, in which videos will be projected and numerical exercises carried out, and practical laboratory experiences, in which they will apply the concepts studied in class, performing and interpreting experiments that they will be in the future able to reproduce autonomously. Communication skills will be implemented during the theoretical lessons, which include moments of open discussion.

Specific skills

A) knowledge and understanding
- knowledge of the main biotechnological applications of enzymes;
- knowledge of the main features of complex multienzymatic systems of biotechnological interest;
- knowledge of the strategies required for protein and enzyme production and engineering;

B) ability to apply knowledge and understanding
- exploiting the knowledge of biochemical techniques to investigate the applications of enzymes and proteins in the field of biotechnology
- understanding and evaluating the impact of structural modifications of biological macromolecules on their biological function;

C) Making judgements
- critical thinking through the study of examples of biotechnological applications of proteins and enzymes taken from the scientific literature
- learning by questioning;

D) Communication skills
- ability to communicate what has been learned during the oral exam;

E) Learning skills
- learning the specific terminology;
- ability to make the logical connections between the topics covered;
- ability to identify the most relevant topics.

Applied Biochemistry2nd3ENG

Educational objectives

General skills

The course aims to provide students with the biochemical bases to: understand the most advanced biotechnological applications of enzymes, proteins and complex multienzymatic systems; understand the methods and strategies required for protein engineering. Students' critical and judgment skills will be developed thanks to class exercises, in which videos will be projected and numerical exercises carried out, and practical laboratory experiences, in which they will apply the concepts studied in class, performing and interpreting experiments that they will be in the future able to reproduce autonomously. Communication skills will be implemented during the theoretical lessons, which include moments of open discussion.

Specific skills

A) knowledge and understanding
- knowledge of the main biotechnological applications of enzymes;
- knowledge of the main features of complex multienzymatic systems of biotechnological interest;
- knowledge of the strategies required for protein and enzyme production and engineering;

B) ability to apply knowledge and understanding
- exploiting the knowledge of biochemical techniques to investigate the applications of enzymes and proteins in the field of biotechnology
- understanding and evaluating the impact of structural modifications of biological macromolecules on their biological function;

C) Making judgements
- critical thinking through the study of examples of biotechnological applications of proteins and enzymes taken from the scientific literature
- learning by questioning;

D) Communication skills
- ability to communicate what has been learned during the oral exam;

E) Learning skills
- learning the specific terminology;
- ability to make the logical connections between the topics covered;
- ability to identify the most relevant topics.

Microbial Biotechnologies: Industrial Applications2nd3ENG

Educational objectives

General skills.

At the end of the course and after passing the exam, the student will have acquired the knowledge and skills in the areas listed below. In general, he/she will be able to: know the biochemistry and the main genome editing methods for microorganisms for industrial use, design the genetic improvement of industrial strains and critically read articles in international scientific journals concerning the topics of the course. On the basis of the acquired knowledge, the student will have the ability to interpret and explain the applications of synthetic biology and the rewiring of metabolic biochemical circuits. Students' critical and judgment skills will be developed thanks to class exercises, in which videos will be projected and numerical exercises carried out, and practical laboratory experiences, in which they will apply the concepts studied in class, performing and interpreting experiments that will be in the future able to reproduce autonomously. Communication skills will be exercised during the theoretical lessons, which include moments of open discussion. In the future, the student will be able to integrate the knowledge and skills just described for the applications of microbial biotechnologies also in other fields, such as the medical one, and in basic research.

Specific skills.

a) knowledge and understanding:
- Knowledge and understanding of the physiology, biochemistry and genetics of microorganisms used in industrial microbial biotechnologies;
- Knowledge of the different microbial metabolisms;
- Knowledge and understanding of the main genome editing techniques on microorganisms of industrial interest;
- Knowledge and understanding of the principles of synthetic biology and metabolic engineering;

b) ability to apply knowledge and understanding:
- ability to describe and explain the physiology and biochemistry of industrial microorganisms;
- ability to apply appropriate techniques to problems of industrial production;

c) autonomy of judgment:
- knowing how to independently solve microbial growth problems;
- being able to identify the best microorganisms for the production of a metabolite of interest;
- knowing how to select and evaluate the most appropriate techniques to solve a bottleneck in the production of a metabolite;

d) communication skills:
- be able to illustrate and explain the physiology and biochemistry of the microorganisms of interest with appropriate terms and with logical rigor;
- being able to describe the main molecular techniques for the modification of microorganisms;
- being able to describe the industrial productions described in class;

e) learning skills:
- acquisition of the fundamentals and cognitive tools to autonomously pursue the study of microbial biotechnologies;
- acquisition of basic knowledge for the applications of synthetic biology and metabolic engineering;
- ability to apply biochemical and molecular techniques in laboratory working environments.

THREE-DIMENSIONAL MODELING

2nd year

LessonSemesterCFULanguage
10598570 | Biochemical Biotechnologies II1st6ENG

Educational objectives

The “Biochemical Biotechnologies II” course is articulated into two integrate modules: “Pharmaceutical Biotechnologies” and “Microbial Biotechnologies: Medical Applications”. The learning outcomes of the integrated course concern the methods for the industrial production of pharmaceutical substances and the biotechnology strategies used to study and contrast bacterial infections. The learning outcomes of each single module can be consulted in the appropriate section of the module.

Pharmaceutical Biotechnologies1st3ENG

Educational objectives

General skills

At the end of the course and upon passing the exam, the student will have acquired knowledge and skills on the molecular and biochemical bases associated with bacterial pathogenicity and on the mechanisms of persistence and resistance of bacteria to drugs and the immune system. This knowledge will allow the student to understand the most innovative biotechnological strategies used for the study and fight against bacterial infections. Students will learn the applications of genomic and proteomic technologies applied to the design of inhibitors of resistance and virulence mechanisms and to the innovative formulation of vaccines. Students' analytical and learning skills will be exercised through the assignment of original scientific works and reviews, used as study and personal elaboration texts in in-depth seminars organized to improve their communication, discussion and interpretation skills of original experimental data

Specific skills

a) knowledge and understanding
knowledge of the mechanisms of action and acquisition of the factors of pathogenicity, resistance, communication and bacterial immunity;
knowledge of biotechnology applied to the formulation of innovative vaccines;
b) applying knowledge and understanding
know how to describe and evaluate sensitivity and specificity of the methodologies of diagnostics and characterization of bacteria;
ability to understand and describe the evolution of microbial biotechnologies applied to the formulation of contemporary and future generation antibacterial and antiviral vaccines;
c) making judgments
know how to analyze recent literature related to microbial biotechnology applications and critically reading of the results;
know how to evaluate advantages and limitations of elaborates and projects in the fields of diagnostics, antibiotic resistance and vaccine development;
d) communication skills
to be able to illustrate and explain with appropriate terms and with scientific rigor scientific research reports and publications including aspects of medical biotechnology applied to the fight against infections;
e) learning skills
acquisition of the fundamentals and cognitive tools to continue independently in the deepening of microbial biotechnology;
acquisition of basic knowledge to progress independently in other biological disciplines.

Microbial Biotechnologies: Medical Applications1st3ENG

Educational objectives

General skills.

On completion of the course, the student:
- will be able to illustrate and compare different methods for the industrial production of pharmaceutical substances using biotechnological techniques;
- will be able to evaluate the strategy underlying the use of the different production systems, such as bacteria, animal and plant cells for biotechnological drugs (for example: antibiotics, vaccines, proteins for therapeutic use, monoclonal antibodies);
- will acquire basic notions of new methodological approaches for the development of biotechnological drugs (e.g.: gene therapy, stem cells).

Specific skills.

The main target of the Biochemical Biotechnologies II - Pharmaceutical Biotechnologies course is to provide the student with knowledge and skills related to the application of:
- Biochemistry and Molecular Biology techniques for the identification of a biotechnological drug (targeted therapeutic strategy);
- Biotechnology of recombinant DNA and protein engineering for the development and production of biotechnological drugs.

Furthermore, the student will have basic notions on the immunogenicity of biotechnological drugs and will be able to understand the meaning of the pharmacological parameters for the quality assurance of the developed products.
Teaching takes place in the form of lectures and group work, but will also include seminars held by industry professionals and specialists in the field, to provide students with a direct contact with the research and development area at an industrial level.

a) knowledge and understanding.
Students will gain up-to-date knowledge in the field of Biotechnological Techniques (Biochemistry and Molecular Biology) and relevant pharmaceutical application. In particular, they will deepen their knowledge of:
- design and production of recombinant vaccines, humanized antibodies, anticancer drugs, enzymes in diagnostics and molecular therapy; RNA and SiRNA interfering techniques as therapeutic tools;
- use of genetically modified organisms (GMOs) in Pharmaceutical Biotechnologies.

b) applying knowledge and understanding.
Students will be able to approach research in the biochemical/pharmacological field using the latest biotechnology methodologies and also be able to identify the appropriate and profitable research strategy to best address the design of novel diagnostic methods, follow new-generation therapeutic/pharmacological approaches or improve existing therapies.

c) making judgments.
The course will consist of interactive lessons held in a classroom, but will include seminars held by industry professionals and specialists in the field. The general concepts and important points of the Pharmaceutical Biotechnologies are explained using an interactive approach based on class discussion and questions aimed at developing a problem-solving attitude, both during lectures and seminars. Students will be invited to ask questions and analyse the topic under discussion so as to acquire and improve their proactive and critical attitude, also using skills and knowledge acquired during previous courses.

d) communication skills.
Student will be able to analyse topics of the Pharmaceutical Biotechnologies course program. They will able to account for the development of biotechnological methods are used nowadays in pharmaceutical research and industry. The final examination will allow evaluation of the student's communication skills, in relation to what they learnt during the course.

e) learning skills.
Students will be able to deepen the topics covered during the course through recommended texts and documents. Students will also develop a learning ability that will allow them to update their knowledge through the consultation of updated scientific bibliography.

10598571 | Ethical and Regulatory Aspects of Scientific Research1st6ENG

Educational objectives

General skills

The course is the first teaching course in Regulatory Aspects of Scientific Research. Regulatory science addresses the safety and efficacy of new medical products, diagnostics and treatments. Regulatory affairs ensure new products meet the regulations and standards set by governing agencies. This course aligns regulations with science in the lifecycle of medical products. The regulatory science is also related to clinical research management focused on regulatory affairs and regulatory sciences.
The students will acquire also the fundamentals on National and CEE pharmaceutical or health products laws, as well as on intellectual property and patenting.
At the end of theoretical lessons, integrated by highly connotative seminars coordinated by the professor:
the students will acquire the fundamentals knowledge on laws governing health and well-being products, the National Health system, the regional health system, the production and the marketing authorization of medicines and of health product with particular regard to the national and European laws.

Specific skills

Knowledge and understanding:
-national and international pharmaceutical laws concerning production and marketing of drugs and of healthcare products (medical devices, food supplements), and concerning regulatory aspects concerning pharmacy;
-devise and implement global strategies for drug, biologic, and device development and evaluation;
- relate principles of clinical research design to practices in clinical trial management;
- basic knowledge on intellectual property and patenting.

Applying knowledge and understanding:
Regulatory science/affairs positions at pharmaceutical companies, as well as medical device and biotechnology companies
ability to understand the law, the economic and the administrative aspects of the health products and of the regional and national healthcare system.

Making judgements:
- be able to refer to specific regulatory and law texts;
- be able to identify , evaluate and correlate regulatory aspects related to each specific health product.

Communication skills:
A classroom environment relies heavily on the quality of communication taking place within it. As an instructor, taking steps towards improving the communication skills of our students will contribute positively towards your classroom climate. Furthermore class discussion will be fundamental to develop critical and highest level of competence to be well prepared when entering the professional ranks as a new pharmacist.

Learning skills
The course aims to enable the transition between university and professional life and to help students to become people with lifelong learning ability and habit.
The course aims to help students to become able, during their professional life, to approach to the regulatory matter, that is always evolving, for health and well being products

Bioethics1st3ENG

Educational objectives

General skills

The course is the first teaching course in Regulatory Aspects of Scientific Research. Regulatory science addresses the safety and efficacy of new medical products, diagnostics and treatments. Regulatory affairs ensure new products meet the regulations and standards set by governing agencies. This course aligns regulations with science in the lifecycle of medical products. The regulatory science is also related to clinical research management focused on regulatory affairs and regulatory sciences.
The students will acquire also the fundamentals on National and CEE pharmaceutical or health products laws, as well as on intellectual property and patenting.
At the end of theoretical lessons, integrated by highly connotative seminars coordinated by the professor:
the students will acquire the fundamentals knowledge on laws governing health and well-being products, the National Health system, the regional health system, the production and the marketing authorization of medicines and of health product with particular regard to the national and European laws.

Specific skills

Knowledge and understanding:
-national and international pharmaceutical laws concerning production and marketing of drugs and of healthcare products (medical devices, food supplements), and concerning regulatory aspects concerning pharmacy;
-devise and implement global strategies for drug, biologic, and device development and evaluation;
- relate principles of clinical research design to practices in clinical trial management;
- basic knowledge on intellectual property and patenting.

Applying knowledge and understanding:
Regulatory science/affairs positions at pharmaceutical companies, as well as medical device and biotechnology companies
ability to understand the law, the economic and the administrative aspects of the health products and of the regional and national healthcare system.

Making judgements:
- be able to refer to specific regulatory and law texts;
- be able to identify , evaluate and correlate regulatory aspects related to each specific health product.

Communication skills:
A classroom environment relies heavily on the quality of communication taking place within it. As an instructor, taking steps towards improving the communication skills of our students will contribute positively towards your classroom climate. Furthermore class discussion will be fundamental to develop critical and highest level of competence to be well prepared when entering the professional ranks as a new pharmacist.

Learning skills
The course aims to enable the transition between university and professional life and to help students to become people with lifelong learning ability and habit.
The course aims to help students to become able, during their professional life, to approach to the regulatory matter, that is always evolving, for health and well being products

Regulatory Aspects of Scientific Research1st3ENG

Educational objectives

General skills

The extraordinary development of scientific research, particularly in the field of life sciences, opens up considerable horizons to knowledge and can contribute to the overall improvement of the life of human beings. To achieve this goal, a climate of trust in science based on transparency, freedom and sharing is necessary. On the ethical level, the target key is to extend the opportunities and the ability to choose the people as part of a company that is focused on accountability and plural culturalism.

Specific skills

Knowledge and understanding
The aim of the course is to pass the study focused on notions. The main theories and positions in the bioethical field will be analyzed. Useful tools will be provided to analyze the issues and various themes typical of bioethical reflection.
 
Ability to apply knowledge and understanding
The ability to use different categories of interpretation, he will allow students to correctly frame the issues under study, identifying the main ethical problems.
 
Autonomy of judgment
The acquisition of these skills and their exercise will be verified through the discussion of specific cases in the classroom. In this way students will be able to develop greater critical skills.  This ability will be aimed at identifying proposals characterized by originality and possibility of realization.
 
Communication skills
Students will be encouraged to acquire communication skills based on rational argument. Only using this methodology will students be able to make a correct and responsible evaluation of the topics covered by the course
 
Learning ability
The pursuit of the educational objectives of the course also includes the awareness that the issues subject to bioethical reflection are rapidly transformed. In progress will direct the teaching, not so much towards the acquisition of notions as towards the improvement of critical skills. This choice is aimed at developing intellectual curiosity and rational argument. In this way the student will be able to identify the most appropriate thematic insights. 

Elective course1st9ENG

Educational objectives

Elective course (9 CTS minimum)

AAF2101 | Communication Skills2nd2ENG

Educational objectives

General skills

At the end of the course the learner will be able to:
- Organize and present scientific data based on the principles of science communication;
- describe how to effectively present different types of data (narrative, table, plot, graphical representation, etc.);

Writing Skills

At the end of the course, the learners will be able to describe

● how to prepare a scientific publication, in particular:
○ how to select a scientific journal based on the subject area, target audience, impact factor, article type, etc.
○ the concept of “scientific journal format”
○ how to structure a scientific article
○ how to write references correctly
○ the features of scientific language
○ best practices of paper writing
● how to structure a grant proposal, in particular:
○ how to identify a suitable call for a given research
○ the main elements of a grant proposal: work packages (WPs), milestones, deliverables, budget, etc.
○ how to structure a grant proposal
○ the different roles of participants (PI, WP leads, partners)

● the characteristics of a scientific report, in particular:
○ how to identify the purpose of a report
○ how to structure a scientific report

Presentation Skills:

At the end of the course, the learner will be able to explain

● how to identify the most appropriate communication style given a target audience (students, experts, examining committee, etc) and a context (formal, non formal, teaching, training, thesis defence, etc.)
● why the body language is important
● what are the “key rules” when communicating science from a stage
● how to move on a stage
● how to use their body and voice
● how to effectively use visual, movable, and portable supports (white board, slides, props, etc.)
● the features of effective slides

Learners will also be able to create
● effective slides, keeping into account what cognitive sciences teach us: cognitive extraneous overload and attention split, and dual coding (how to combine words and visuals).

Graphic Skills

knowledge and understanding:

Students will be able to:
● Describe and explain the concept of image resolution
● Distinguish among the different colour spaces
● Tell the difference between raster and vector image formats
● Recognise the different image file formats
● Explain the concept of image compression
● Utilise the main tools (from the main palette) of Open Source software such as GIMP, Inkscape, for raster and vector image modification.
● Organise the layout of a complex image based on the rules of graphic design composition.

Application, analysis and synthesis:

Students will be able to:

● Design and create a multi-panel image from scratch. This includes the ability to: modify source images; include legends and diagrams; export data and plots as image files; organize the layout and assemble the figure
● Prepare scientific figures and illustration in agreement with editorial artwork-guidelines
● Design and export images in the correct format, with image properties optimized for a specific communication media (e.g. scientific paper, research project, oral presentations, poster)

AAF2105 | Laboratory Placement2nd12ENG

Educational objectives

Experimental training for the preparation of the thesis and the final examination. Students have the opportunity to carry out internships in university laboratories or in public and private research institutions.
The autonomy of judgement will be developed by performing appropriate experiments to achieve adequate results related to the research project, and interpreting the data.
At the end of this experience, students will have acquired knowledge, competence, practical and critical skills concerning a specific research topic. These skills will be used for the compilation of the thesis and the preparation of the final examination.

AAF2106 | Final Examination2nd10ENG

Educational objectives

The final examination consists in the preparation and discussion of an original dissertation written in English by the student, under the guidance of a supervisor, and following a specific laboratory training entirely dedicated to the experimental work subject of the thesis. At the end of this experience, the students will be able to report in writing, and to present and critically discuss the experimental research work carried out on a specific topic, also demonstrating knowledge and critical understanding of the relevant scientific literature.

OPTIONAL EXAM

Optional groups

The student must acquire 3 CFU from the following exams
LessonYearSemesterCFULanguage
AAF2104 | Laboratory Rotation1st2nd3ENG

Educational objectives

Students will be oriented in the choice of the topic of their experimental thesis through a short internship that requires the attendance of three laboratories specialized in various research fields and using different methodological approaches. At the end of this experience, the students will have acquired a better understanding for a conscious choice of the research topic and the laboratory in which they intend to carry out the experimental thesis.

AAF1161 | OTHER LANGUAGE SKILLS1st2nd3ITA

Educational objectives

Italian language learning activities for foreign students.

The student must acquire 6 CFU from the following exams
LessonYearSemesterCFULanguage
10598572 | Biophysical Chemistry2nd1st6ENG

Educational objectives

General skills

The issues developed in this course concern the physico-chemical properties of biological systems and the spectroscopic and structural techniques, theoretical and experimental, that allow their characterization. Theoretical models and related proofs regarding such complex systems will be treated.

Specific Skills

As regards essential knowledge, the student should acquire skills on physico-chemical properties of biological systems and the experimental and theoretical methodologies more used to investigate them. In this respect, the student should know the main thermodynamic and kinetics processes concerning biological systems, the involved quantities and functions and their macroscopic and microscopic physical meaning. It should be clearly understood the approximations and the hypothesis at the base of the models used. It is expected that the student will show the capacity of choosing formulations and equations suitable to solve quantitative problems and methods proper to investigate the proposed systems (first and second Dublin descriptors).
The capability of analyzing the problems of synthesis and logical coherence will be evaluated as well as the ability to adopt a correct language (third and fourth Dublin descriptors).
Finally, considering that the course belongs to the graduate degree (second cycle), competence on applications of techniques to solve biological relevant problems from a chemical-physical point of view will be appreciated.

10598577 | Enzyme Kinetics2nd1st6ENG

Educational objectives

General skills

The purpose of this course is to provide the students with the fundamental intellectual tools required to carry out measurements, analyses and interpretation of enzyme kinetics. At the end of the course, the students will be confident with the elementary concepts of chemical kinetics, will understand the theoretical basis of steady state and rapid equilibrium enzyme kinetics, and will be able to derive the relevant rate equations. They will also be familiar with the practical aspects of enzyme kinetics, such as enzyme assay methods and the use of computer software to analyse kinetics data. The understanding and analytical skills of the students will include enzyme reactions with more than one substrate, enzyme inhibition and activation. Concerning the transient phase of enzyme reactions, students will understand the theoretical basis of rapid kinetics and the main experimental techniques used for their measurement; they will also be able to analyse and interpret rapid kinetics.

Specific skills

At the end of the course the student will acquire

a) knowledge and understanding of:
 theoretical principles of single substrate and multisubstrate steady-state and rapid equilibrium kinetics;
 practical aspects linked to the measurement and analysis of enzyme kinetics, which include the various enzyme assay methods but also the correct determination of reaction velocity from a progress curve, the strategies for determination of kinetic and equilibrium constants using graphical methods and computer software, the determination of active site concentration and the statistical analysis of enzyme kinetics data;
 the effect of pH and temperature on enzyme activity and kinetic parameters;
 the main types of enzyme inhibition and activation, including complex mechanisms deriving from allosteric and non-allosteric interactions with small molecules; students will also know and understand irreversible, mechanism-based inhibition; in this context, students will appreciate how enzymes are regulated in the metabolism and how enzyme inhibition can be used as a means of control of cell metabolism in medicine;
 theoretical principles of pre-steady state kinetics and also the main experimental techniques and instruments used for the measurement of rapid kinetics, including continuous-flow, stopped-flow, laser and relaxation methods.

b) ability to apply knowledge and understanding:
 apply the principles of steady-state and rapid equilibrium kinetics to derive equations describing the behaviour of single substrate and multisubstrate reactions;
 apply these equations to the analysis of kinetic data, using graphical methods and computer software, in order to estimate kinetic and equilibrium parameters;
 apply knowledge on practical aspects of enzyme kinetics to carry out correct experimental measurements and analysis of kinetic data;
 derive rate equations that describe simple and complex activation and inhibition systems, and apply such equations to analyse kinetics data and estimate kinetic and equilibrium constants;
 apply knowledge on the transient phase of enzyme reactions to derive rate equations describing pre-steady state kinetics; apply these equation, using computer software, to estimate kinetic parameters.
 at the end of the course, students will understand how enzyme kinetics data can be used in the study of structure-function relationships of proteins.

c) autonomy of judgment:
 for a specific enzyme kinetics study, choose the most appropriate experimental set up and measurement method;
 judge the goodness of the experimental results in terms of reproducibility and replicability;
 recognize the main features of the system under study, so as to derive or identify in the literature the equations required for data analysis; use these equations to analyse the experimental data in quantitative terms, using appropriate computer software;
 interpret the outcome of kinetic analyses, so as to propose the most appropriate theoretical model describing the behaviour of the experimental system under study.

d) communication skills:
 produce PowerPoint presentations with experimental data, equations and graphs;
 for a specific enzyme kinetics system, explain the analysis of experimental data and their interpretation, present a theoretical model that explains experimental data;
 trace the chosen theoretical model back to structure-function relationships.

e) learning ability:
 autonomously face and solve novel enzyme kinetics problems;
 independently continue and make progress in the study of enzyme kinetics;
 learn independently, or with limited supervision, how to apply the skills acquired in this course to the experimental laboratory work.

10598575 | Nanotechnologies2nd1st6ENG

Educational objectives

General Skills.

The teaching course will be held with lectures and supplemented by thematic seminars coordinated by the teacher for highly specific topics.
The course aims to develop the following skills:
-Knowledge of the structure and function of the main classes of nanovectors, the limitation on the formulations and of the production of nanovectors;
-Knowledge of the relationship between physical-chemical properties and applications of the nanocarrier;
-Knowledge and understanding of the various methodologies to properly characterize the physical-chemical properties of the nanocarrier;
-Knowledge and understanding of the various active substances used to functionalize the nanocarrier surface to perform active and passive targeting;
-Knowledge and understanding of the most appropriate nanocarrier to select on the basis of the nature of active loaded molecules and the field of application.

Specific skills.

a) knowledge and understanding:
- Knowledge and understanding of the relationship between structure and function of the main classes of nanocarriers and their physical-chemical properties;
- knowledge of the main techniques for their characterization;
- knowledge of the active compounds and their surface functionalization for the targeted delivery by using active or passive strategy;
- knowledge of the limits depending on the biochemical structure of the active ingredient regarding to its field of application underlying the main properties influencing the choice of the nanocarrier;

b) applying knowledge and understanding:
- ability to select and explain the proper formulation of the nanocarrier depending on the nature of the substance and its field of application;
- ability to select appropriate techniques for nanocarrier characterization;

c) making judgments:
- be able to solve delivery problems;
- be able to identify biological and biomedical barriers related to the administration route or the field of application and therefore to select the most appropriate carrier;

d) communication skills:
- be able to illustrate and explain the main nanocarriers with appropriate terms and with logical rigor;
- be able to explain the main methodologies of characterization in general;
- be able to describe targeting strategies and the field of application of the nanocarrier;

e) learning skills:
- acquisition of the fundamentals and cognitive tools to continue independently in the study of nanotechnologies;
- acquisition of the basic knowledge necessary to progress autonomously in other biological and technological disciplines;
- ability to learn quickly and apply nanobiotechnology techniques in various working environments.

Nanoparticle Applications2nd1st3ENG

Educational objectives

General Skills.

The teaching course will be held with lectures and supplemented by thematic seminars coordinated by the teacher for highly specific topics.
The course aims to develop the following skills:
-Knowledge of the structure and function of the main classes of nanovectors, the limitation on the formulations and of the production of nanovectors;
-Knowledge of the relationship between physical-chemical properties and applications of the nanocarrier;
-Knowledge and understanding of the various methodologies to properly characterize the physical-chemical properties of the nanocarrier;
-Knowledge and understanding of the various active substances used to functionalize the nanocarrier surface to perform active and passive targeting;
-Knowledge and understanding of the most appropriate nanocarrier to select on the basis of the nature of active loaded molecules and the field of application.

Specific skills.

a) knowledge and understanding:
- Knowledge and understanding of the relationship between structure and function of the main classes of nanocarriers and their physical-chemical properties;
- knowledge of the main techniques for their characterization;
- knowledge of the active compounds and their surface functionalization for the targeted delivery by using active or passive strategy;
- knowledge of the limits depending on the biochemical structure of the active ingredient regarding to its field of application underlying the main properties influencing the choice of the nanocarrier;

b) applying knowledge and understanding:
- ability to select and explain the proper formulation of the nanocarrier depending on the nature of the substance and its field of application;
- ability to select appropriate techniques for nanocarrier characterization;

c) making judgments:
- be able to solve delivery problems;
- be able to identify biological and biomedical barriers related to the administration route or the field of application and therefore to select the most appropriate carrier;

d) communication skills:
- be able to illustrate and explain the main nanocarriers with appropriate terms and with logical rigor;
- be able to explain the main methodologies of characterization in general;
- be able to describe targeting strategies and the field of application of the nanocarrier;

e) learning skills:
- acquisition of the fundamentals and cognitive tools to continue independently in the study of nanotechnologies;
- acquisition of the basic knowledge necessary to progress autonomously in other biological and technological disciplines;
- ability to learn quickly and apply nanobiotechnology techniques in various working environments.

Drug Delivery and Targeting Strategies2nd1st3ENG

Educational objectives

General Skills.

The teaching course will be held with lectures and supplemented by thematic seminars coordinated by the teacher for highly specific topics.
The course aims to develop the following skills:
-Knowledge of the structure and function of the main classes of nanovectors, the limitation on the formulations and of the production of nanovectors;
-Knowledge of the relationship between physical-chemical properties and applications of the nanocarrier;
-Knowledge and understanding of the various methodologies to properly characterize the physical-chemical properties of the nanocarrier;
-Knowledge and understanding of the various active substances used to functionalize the nanocarrier surface to perform active and passive targeting;
-Knowledge and understanding of the most appropriate nanocarrier to select on the basis of the nature of active loaded molecules and the field of application.

Specific skills.

a) knowledge and understanding:
- Knowledge and understanding of the relationship between structure and function of the main classes of nanocarriers and their physical-chemical properties;
- knowledge of the main techniques for their characterization;
- knowledge of the active compounds and their surface functionalization for the targeted delivery by using active or passive strategy;
- knowledge of the limits depending on the biochemical structure of the active ingredient regarding to its field of application underlying the main properties influencing the choice of the nanocarrier;

b) applying knowledge and understanding:
- ability to select and explain the proper formulation of the nanocarrier depending on the nature of the substance and its field of application;
- ability to select appropriate techniques for nanocarrier characterization;

c) making judgments:
- be able to solve delivery problems;
- be able to identify biological and biomedical barriers related to the administration route or the field of application and therefore to select the most appropriate carrier;

d) communication skills:
- be able to illustrate and explain the main nanocarriers with appropriate terms and with logical rigor;
- be able to explain the main methodologies of characterization in general;
- be able to describe targeting strategies and the field of application of the nanocarrier;

e) learning skills:
- acquisition of the fundamentals and cognitive tools to continue independently in the study of nanotechnologies;
- acquisition of the basic knowledge necessary to progress autonomously in other biological and technological disciplines;
- ability to learn quickly and apply nanobiotechnology techniques in various working environments.

10598578 | Medicinal Chemistry2nd1st6ENG

Educational objectives

General skills

At the end of the course, the student will have acquired the main basic notions regarding medicinal chemistry by a biochemical approach. In particular, he will know the physical and chemical principles of the action of drugs, the classes of receptors on which the drugs act and the action of the main classes of drugs on their receptors.

Specific skills

a) knowledge and understanding
- knowledge of the main classes of receptors involved in the action of drugs
- knowledge of the chemical structure of drugs

b) applying knowledge and understanding
- explain the mechanism of action of drugs by a biochemical approach
- explain the binding of the drugs on their receptors

c) making judgments
- identify the biochemical mechanisms of the drug action
- suggest the potential action of drugs on different receptors

d) communication skills
- draw the chemical structures of drugs
- describe the interaction of drugs on their receptors by a biochemical approach

e) learning skills
- acquisition of the basics of medicinal chemistry to carry out in-depth study of the subject
- apply the knowledge acquired in medicinal chemistry working conditions

10598573 | Biochemical and Molecular Diagnostics2nd1st6ENG

Educational objectives

General skills.

The student will be able to fully describe the execution of a diagnostic test, starting from the phase of collection/preparation of biological materials, to the detection of the main macromolecules (proteins, lipids, carbohydrates) or metabolites of clinical relevance, up to the interpretation of the variations in their levels or their chemical-physical properties in the context of the physiology or pathology of different organs and tissues.

Specific skills.

a) knowledge and understanding:
- theoretical knowledge of the main techniques used for the preparation and analysis of biological samples in biochemical diagnostics;
- knowledge of the biological role of the main markers used in biochemical diagnostics;
- understanding the significance of the variations in the levels and/or in the chemical-physical properties of the main markers used in biochemical diagnostics;

b) applying knowledge and understanding:
- ability to critically evaluate the adequacy and limits of a given experimental procedure to address specific questions in the biochemical diagnostic field;
- ability to evaluate the diagnostic significance of the current and potential new markers in the context of biochemical diagnostics;

c) making judgments:
- ability to critically evaluate the results of the diagnostic tests presented in the course;
- ability to critically analyse the scientific literature in the field of clinical biochemistry;

d) communication skills:
- ability to illustrate and describe the main analytical techniques with scientific rigor and properties of language;
- ability to explain the results of the main diagnostic tests, linking them with the physiology and pathology of the apparatus, organ or tissue under examination;

e) learning skills:
- knowledge of the appropriate terminology used in the field;
- acquisition of the basic knowledge to adequately support working in the biochemical diagnostics field.

Biochemical Diagnostics2nd1st3ENG

Educational objectives

General skills.

At the end of the course, students will acquire the theoretical/practical principles of the most frequently used methodologies in Molecular Diagnostics and will be able to critically evaluate and interpret the experimental procedures and the result of the tests used for the diagnosis of some of the main pathologies. In particular, students will be able to fully describe the execution of a diagnostic test, starting from the phase of collection/preparation of biological materials (such as plasma, serum, urine or tissues or cellular preparations), to the detection of the main macromolecules (proteins, lipids, carbohydrates) or metabolites of clinical relevance, up to the interpretation of the results of the diagnostic study.

Specific skills.

a) knowledge and understanding
- knowledge of the techniques of Molecular Biology and Molecular Genetics used in Molecular Diagnostics, including their theoretical basis;
- knowledge of the fundaments of Molecular Biology and Molecular Genetics needed to interpret the results of molecular diagnostic;

b) applying knowledge and understanding
- ability to critically evaluate the adequacy and limits of the different methodologies of Molecular Diagnostics;
- ability to choose the appropriate molecular methodology to address a specific diagnostic issue;

c) making judgments
- be able to critically evaluate the results of the diagnostic tests presented in the course;
- be able to critically analyse the scientific literature in the field of Molecular Diagnostics;

d) communication skills
- be able to illustrate and describe the main analytical techniques with scientific rigor and property of language;
- be able to explain and interpret the results of the main diagnostic tests, in relation with the pathological issues under examination;

e) learning skills
- knowledge of the correct terminology used in the field;
- acquisition of the basic knowledge needed to work in a Molecular Diagnostic lab.

Molecular Diagnostics2nd1st3ENG

Educational objectives

General skills.

The student will be able to fully describe the execution of a diagnostic test, starting from the phase of collection/preparation of biological materials, to the detection of the main macromolecules (proteins, lipids, carbohydrates) or metabolites of clinical relevance, up to the interpretation of the variations in their levels or their chemical-physical properties in the context of the physiology or pathology of different organs and tissues.

Specific skills.

a) knowledge and understanding:
- theoretical knowledge of the main techniques used for the preparation and analysis of biological samples in biochemical diagnostics;
- knowledge of the biological role of the main markers used in biochemical diagnostics;
- understanding the significance of the variations in the levels and/or in the chemical-physical properties of the main markers used in biochemical diagnostics;

b) applying knowledge and understanding:
- ability to critically evaluate the adequacy and limits of a given experimental procedure to address specific questions in the biochemical diagnostic field;
- ability to evaluate the diagnostic significance of the current and potential new markers in the context of biochemical diagnostics;

c) making judgments:
- ability to critically evaluate the results of the diagnostic tests presented in the course;
- ability to critically analyse the scientific literature in the field of clinical biochemistry;

d) communication skills:
- ability to illustrate and describe the main analytical techniques with scientific rigor and properties of language;
- ability to explain the results of the main diagnostic tests, linking them with the physiology and pathology of the apparatus, organ or tissue under examination;

e) learning skills:
- knowledge of the appropriate terminology used in the field;
- acquisition of the basic knowledge to adequately support working in the biochemical diagnostics field.

10598581 | Sustainable Crop Protection2nd1st6ENG

Educational objectives

General skills.

At the end of the course and upon passing the exam, the student will acquire the knowledge and skills in the areas listed below.
In general, the student will be able to:
- describe the main causes of diseases in terms of plant pathology;
- explain the main metabolic pathways underlying the communication between plant and pathogen;
- describe the constitutive and inducible ways of defense of the plant;
- explain the biochemical mechanisms during plant-environment-biome (phytobiome) communication to improve the sustainable strategies for containing plant diseases;
- describe the metagenomic and bioinformatics approach to control and contain the plant diseases exploiting the natural abilities of the agrobiomes;
- describe the mechanisms of action of the main agrochemicals to contain the plant diseases;

Conceptual tools will be provided to carry out laboratory experiences, which will be supported by facilities made available by the University (e.g. Smart Phytotrones). Communication skills will be explored during some lessons, in fact the course provide the use bibliographic resources and to clearly present scientific contents relating to the aspects covered by the program.

Specific skills.

a) knowledge and understanding:
- knowledge and understanding of the plant-pathogen-biome-environment interaction (pathobiome);
- knowledge of phytopathogens;
- knowledge and understanding of the concept of disease and the pathobiome;
- knowledge of the main metabolic pathways underlying plant-pathogen communication.
- knowledge of biostimulants and bio-protectors of crops.
- knowledge of investigation techniques in the study of plant-pathogen relationships (e.g. metagenomics and bioinformatics);
- understanding of the more correct and sustainable use of products for the plant protection with the purpose of protecting human health and environment.

b) applying knowledge and understanding:
- ability to use specific terminology;
- ability to interpret and explain the biological phenomena underlying the plant-pathogen interaction;
- ability to outline the classic and integrated strategies to control the plant diseases;
- ability to use bibliographic resources and software available on the Web to address and interpret specific problems relating to the topics being taught;
- ability to search in the main databases for the metagenomic characterization of complex communities.

c) making judgments:
- be able to identify the biological mechanisms underlying plant-pathogen interactions;
- be able to identify new strategies for protection of the main crops of food interest;
- be able to acquire the ability of critical judgment, through the study of scientific articles on key aspects and through in-depth collective discussions.

d) communication skills:
- be able to describe the metabolic pathways involved during the interaction among plants, organisms and the environment;
- be able to illustrate a scientific work through discussions and seminars;
- be able to illustrate the results of the research and experimentation carried out in the context of the exercises.

e) learning skills:
- learning the specific terminology;
- acquisition of an autonomous and flexible study method, to allow to conduct research and personal insights in the field of scientific research;
- acquisition of skills in the use of bioinformatics tools.

10616878 | Biotechnology of Fermented Foods and Beverages2nd1st6ENG

Educational objectives

General skills.
The course is designed to provide an understanding of the principles of food microbiology and food biotechnology (6 credits).
The main focus is a detailed analysis of the quality of raw materials and the biotechnological processes involving the use of microorganisms. The course will cover the ecophysiology and control of food microorganisms.
It will also explore the influence of fermentation processes—whether spontaneous or using selected starter cultures—on the nutritional, functional, technological, and sensory properties of foods and beverages. These topics will be discussed in the context of key agri-food supply chains, including wine, dairy, bakery, fermented meat, and fermented vegetables.
Specific Skills

a) Knowledge and Understanding
Knowledge of the main microbiological aspects related to raw materials used in the agri-food sector, including the criteria for the selection and application of microbial starters, as well as the main biotechnological approaches for producing high-quality foods and beverages.

b) Applying Knowledge and Understanding
Ability to independently identify and apply appropriate biotechnological methods for food processing, hygiene, and safety within various agri-food production contexts.

c) Making Judgments
Ability to evaluate and propose biotechnological strategies aimed at achieving desired quality standards—organoleptic, technological, hygienic, and nutritional—in fermented food products.

d) Communication Skills
Ability to effectively communicate the role and significance of microorganisms, as well as the objectives of biotechnological processes, in the control and transformation of raw materials into food products that meet specific quality requirements.

e) Learning Skills
Ability to independently update and deepen knowledge of food biotechnological processes through the study of scientific literature in the microbiological field, with particular attention to applications in oenology, dairy production, leavened baked goods, fermented meats, and vegetables.

10616877 | Nutritional Biochemistry2nd1st6ENG

Educational objectives

Specific skills

a) knowledge and understanding:
Knowledge of the structure and functions of the major biomolecules; the digestion, absorption and transport processes; the main metabolic pathways and their regulation and interrelations; the roles of hormones in digestion; the role of macro-and micro-nutrients, nutraceuticals, food supplements, and dietary products.

b) applying knowledge and understanding:
Ability to identify the nutritional potential of the different foods, nutraceuticals, food supplements and to describe the main nutrition deficiencies; Ability to correlate metabolic pathways and hormones functionality to the processes of digestion, absorption and transport of nutrients in blood circulation.

c) making judgments:
Ability to describe and to analyze the metabolic processes involving foods included in diet; identification, through metabolic evidence, of the potential nutritional deficiencies in subjects under unbalanced diet.

d) communication skills:
Ability to describe the biochemical pathways relevant to nutrient metabolism and the main biochemical techniques for the investigation of the nutrient metabolism.

e) learning skills:
Critical reading of scientific articles in nutritional biochemistry.

10611803 | PROGRAMMING AND MACHINE LEARNING FOR BIOLOGICAL DATA2nd1st6ENG

Educational objectives

After completing the course, learners will be able to:
Run Python programs
Store data in programs
Use built-in functions
Detect syntax errors occurring in programs
Read tabular data
Visualise and statistically analyse tabular data
Plot biological data
Create functions
Repeat actions with loops
Make choices
Determine where errors occurred
Manage errors and exceptions
Make programs readable
Use software that other people have written
Recognize various data formats to represent DNA/RNA sequence data
Independently write Python scripts to
Read in sequence data using Python or BioPython modules
Parse data files
Run external programs
Read input from the command line
Describe a wide range of machine learning techniques
Recognize what machine learning method is most applicable to given data analysis problems
Transform biological data for ML application. In particular, transform sequence data into a machine-readable format for input into a machine learning pipeline
Preprocess Biological Sequence Data for Natural Language Processing
Build a Random Forest model (RF) to classify a set of sequences

10616832 | Biotechnology applied to waste and wastewater treatment and valorization2nd1st6ITA

Educational objectives

EDUCATIONAL GOALS
The course contributes to the achievement of the training objectives set out in the Manifesto of Studies of the Master Degree in Industrial Chemistry (ARES curriculum: Environment, Resources, Energy, Safety).
In particular, the course aims to provide an overview on the application of chemical, physical, and biotechnological processes in the field of environmental protection, with particular reference to the main processes involved in waste and wastewater treatment, including their valorization, as both secondary resources and for energy purposes.
In this context, the course also intends to provide the key elements of the analysis and description of the aforementioned processes, also based on chemical engineering methods (kinetic analysis, mass and energy balances, thermodynamic relationships), providing specific examples for the cases studied.

Students who have passed the examination will have known and understood (descriptor 1 - acquired knowledge):
- Fundamentals of the main chemical, physical, and biological processes for the treatment of waste and wastewater and for energy and materials recovery
- Methods of quantitative representation of processes and preliminary sizing of the related equipment
- Use of specific techniques for measurement, monitoring, and control of relevance in the studied processes

Students who have passed the examination will be able (descriptor 2 - acquired skills):
- To apply methodologies for the analysis of processes of industrial relevance in the field of treatment and valorization of waste and wastewater and for the production of energy from renewable resources (up to the preliminary design of the main process units)
- To frame the contents learned in the more general context of environmental protection, also with reference to the regulatory framework
- To frame the contents learned in the more general context of development of chemical industry, with particular reference to environmental sustainability.

Along with lectures, the execution of numerical exercises and participation to laboratory activities, with self-employment of written reports on the studied topics, will allow to increase the critical and judgmental skills (descriptor 3) and the ability to communicate what has been learned (descriptor 4)