BIODIVERSITY ' MARINA AND SYSTEMATIC BIOLOGICAL

Course objectives

General objectives At the end of the course the student will have acquired a descriptive knowledge of patterns of marine biodiversity at the global and regional scale (with a focus on the Mediterranean). The student will also be able to describe the traditional and modern methods of study of the biodiversity. Furthermore, the student will define the theoretical and methodological principles of the modern biological systematics., being able to use and apply (especially after the lab practices) the methods of phylogenetic inference. Finally, the student will be able to provide examples of building modern biological classifications. Specific objectives Knowledge and understanding: The student will acquire the knowledge of the quantitative and spatial patterns and of the dynamics of the marine biodiversity, as well as of the traditional and modern methods of study; will understand how and to what extent the knowledge on patterns and dynamics on biodiversity (especially marine) are relevant to EcoBiology, and how an evolutionary framework is the only possible one. Ability to apply knowledge and understanding: The student will acquire the skills to use methods to estimate and analyse biodiversity, to make phylogenetic inferences, and to use the critical tools for the selection of the best fit methods to different case-studies. Critical and judgmental capacities: During the laboratory practices, the student will develop critical and judgmental skills by coping with potentially different dataset (morphological, genetical, molecular, geographic, ecological), having to design experimental protocols appropriate to test hypotheses. Communication skills: Students, especially during the laboratory practices, are encouraged to interact with each other and with the teachers to implement practical activities (observation, identification, analysis and critical comments of the experimental datasets; hypotheses to test; methods and models to use). Learning skills: The student will acquire the language of modern Systematic Biology, in terms of both taxonomic nomenclature and descriptive nomenclature of the experimental methods in the study of Biodiversity and in phylogenetic inference. These skills will make the student able to face future ecobiological studies, including experimental activities where a high level of methodological integration is required to the modern biologist.

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MARCO OLIVERIO Lecturers' profile
MARCO OLIVERIO Lecturers' profile
GIULIA FASSIO Lecturers' profile

Program - Frequency - Exams

Course program
Biodiversity: definitions, levels, scales, numbers.Marine biodiversity: patterns at global and regional scales. The numbers of marine biodiversity (numbers of species, hotspots, knowledge and conservation).Marine Biodiversity: tropical, temperate and polar areas.Marine Biodiversity of the Mediterranean Sea: origin and history of the Mediterranean biodiversity.Methods for the study of marine biodiversity. The inventories of Biodiversity. Traditional approaches to the study of marine biodiversity. The historical oceanographic campaigns. Explorations of the deep sea. The study of marine biodiversity in Italy. The modern approaches to the study of marine biodiversity. Integrative Biology and Biodiversity.Classification of Biodiversity. Systematics, Taxonomy, Classification: definitions and ambits (Taxon, Clade, Mono- Poly- Paraphyly) of systematics in Biology. Naturality of thte systems; outline of history of systematic biology. Biological Classifications. The Codes of nomenclature (Categories, ICZN, PhyloCode). Schools of Systematics (Traditional, Cladistics, Phenetics).Principles and methods of phylogenetic systematics: Methods by distance, parsimony; likelihhood. Molecular tools in phylogenetics and systematic biology. DNA barcoding, Integrative Taxonomy, species delimitation methods. Experimental design for a phylogenetic and species delimitation studies. Basics on the main specific softwares. The study of the biodiversity using first, second, and third generation sequencing methods (Metabarcoding, Phylogenomics, Mitophylogenomics, RAD-seq, Transcriptomics). Classification. Insights of Systematic Biology of the main marine organisms.
Prerequisites
General knowledge of biology.
Books
For the update list of books, scientific papers, and slides check the course webpage at https://elearning.uniroma1.it/course/view.php?id=14175
Teaching mode
The course includes weekly frontal lessons and practical classes in the laboratory that will be held at the end of the course.
Frequency
Classroom
Exam mode
The exam aims to verify the level of knowledge of the topics. The evaluation is expressed in thirtieths (minimum grade 18/30, maximum mark 30/30 with honors).
Lesson mode
The course includes weekly frontal lessons and practical classes in the laboratory that will be held at the end of the course.
GIULIA FASSIO Lecturers' profile

Program - Frequency - Exams

Course program
Biodiversity: definitions, levels, scales, numbers.Marine biodiversity: patterns at global and regional scales. The numbers of marine biodiversity (numbers of species, hotspots, knowledge and conservation).Marine Biodiversity: tropical, temperate and polar areas.Marine Biodiversity of the Mediterranean Sea: origin and history of the Mediterranean biodiversity.Methods for the study of marine biodiversity. The inventories of Biodiversity. Traditional approaches to the study of marine biodiversity. The historical oceanographic campaigns. Explorations of the deep sea. The study of marine biodiversity in Italy. The modern approaches to the study of marine biodiversity. Integrative Biology and Biodiversity.Classification of Biodiversity. Systematics, Taxonomy, Classification: definitions and ambits (Taxon, Clade, Mono- Poly- Paraphyly) of systematics in Biology. Naturality of thte systems; outline of history of systematic biology. Biological Classifications. The Codes of nomenclature (Categories, ICZN, PhyloCode). Schools of Systematics (Traditional, Cladistics, Phenetics).Principles and methods of phylogenetic systematics: Methods by distance, parsimony; likelihhood. Molecular tools in phylogenetics and systematic biology. DNA barcoding, Integrative Taxonomy, species delimitation methods. Experimental design for a phylogenetic and species delimitation studies. Basics on the main specific softwares. The study of the biodiversity using first, second, and third generation sequencing methods (Metabarcoding, Phylogenomics, Mitophylogenomics, RAD-seq, Transcriptomics). Classification. Insights of Systematic Biology of the main marine organisms.
Prerequisites
General knowledge of biology.
Books
For the update list of books, scientific papers, and slides check the course webpage at https://elearning.uniroma1.it/course/view.php?id=14175
Teaching mode
The course includes weekly frontal lessons and practical classes in the laboratory that will be held at the end of the course.
Frequency
Classroom
Exam mode
The exam aims to verify the level of knowledge of the topics. The evaluation is expressed in thirtieths (minimum grade 18/30, maximum mark 30/30 with honors).
Lesson mode
The course includes weekly frontal lessons and practical classes in the laboratory that will be held at the end of the course.
  • Lesson code1041627
  • Academic year2025/2026
  • CourseSciences and Teaching of Natural Systems
  • CurriculumCurriculum unico
  • Year2nd year
  • Semester1st semester
  • SSDBIO/05
  • CFU6